Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8961674_8963124_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8961674 - 8963124

Intron Length:

1451

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTAAGTCTT

5'SS Class:

major

3'SS Sequence:

ATTCTGCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATGTTTTTAATA

Flanking Amino Acid:

FDNSDEDELGAVSPALRSSK

Intron Amino Acid Position:

797

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.1

74.7

41.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.2

0.59

0.9

70.3

35.7

Minor 5ss

42.1

-0.9

3.1

60.2

44.1

Minor BPS

0.66

1.1

72.62

33.8

Associated Gene:

Gene:

MED13L

Ensembl Gene ID:

ENSAPLG00000008117

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038994

8924916 - 9113868

188953

ENSAPLT00000034575

8924916 - 9119342

194427

ENSAPLT00000008475

8925960 - 9113868

187909