About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8964705_8966084_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8964705 - 8966084
Intron Length:
1380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
EVNSDSTALKRLLAQPNKRF
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.9
0.9
0.7
82.1
34.6
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038994
8924916 - 9113868
188953
ENSAPLT00000034575
8924916 - 9119342
194427
ENSAPLT00000008475
8925960 - 9113868
187909