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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_8975442_8976715_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8975442 - 8976715
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
MAQSSPSPFQVLVSPYGLNG
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89
0.88
0.7
84.2
30.3
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034575
8924916 - 9119342
194427
ENSAPLT00000008475
8925960 - 9113868
187909
ENSAPLT00000038994
8924916 - 9113868
188953