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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9020917_9094671_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9020917 - 9094671
Intron Length:
73755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TATGTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTCTTCTGAGCA
Flanking Amino Acid:
LVDVIHRELHMVEEGLWENG
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
39.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.9
0.72
0.8
77.5
36.5
Minor 5ss
44.1
-0.6
2.9
63.9
41.5
Minor BPS
52
0.06
1.7
63.44
43.1

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034575
8924916 - 9119342
194427
ENSAPLT00000008475
8925960 - 9113868
187909
ENSAPLT00000038994
8924916 - 9113868
188953