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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9094806_9094880_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9094806 - 9094880
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAATTT
5'SS Class:
major
3'SS Sequence:
CAATTCTGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
GATGATCCAATT
Flanking Amino Acid:
LAELTGIKWRSFIRCLQANL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
75.1
35.7
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
67.7
0.4
1
65.4
40.5
Minor 5ss
42.2
-0.9
3.5
64.9
46.4
Minor BPS
40.9
-0.6
1.9
55.94
40.2

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008475
8925960 - 9113868
187909