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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9117167_9118892_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9117167 - 9118892
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCATGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
ACTTCCTGACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
67.8
0.4
0.9
65.5
35
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
53.3
0.18
1.9
72.65
43.8

Associated Gene:

Gene:
MED13L
Ensembl Gene ID:
ENSAPLG00000008117
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034575
8924916 - 9119342
194427