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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9132454_9132772_F

Intron Information:

Intron Rank:
141148
Intron Class:
major
Intron Phase:
Intron Coordinates:
9132454 - 9132772
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTTGT
5'SS Class:
major
3'SS Sequence:
ATCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATGTTCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
74.8
38.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.7
0.71
0.9
73
41.6
Minor 5ss
42
-0.9
2.9
58.7
45.8
Minor BPS
51
0.03
1.7
64.22
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026027
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048172
9132319 - 9133164
846