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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9132841_9132944_F

Intron Information:

Intron Rank:
141149
Intron Class:
major
Intron Phase:
Intron Coordinates:
9132841 - 9132944
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTAAA
5'SS Class:
major
3'SS Sequence:
TTGCTTTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77
33.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
76.3
0.59
0.9
70.2
40.4
Minor 5ss
35.4
-1.7
3
41.5
39.4
Minor BPS
78.3
0.88
1.5
86.03
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026027
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048172
9132319 - 9133164
846