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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_914708_955350_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
914708 - 955350
Intron Length:
40643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AAAGTAATAGCT
Flanking Amino Acid:
CQRIAPSSRNRSNSLFNEVV
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
40.2
-0.6
1.9
54.62
40.4

Associated Gene:

Gene:
TMEM132C
Ensembl Gene ID:
ENSAPLG00000011520
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012003
853775 - 1011790
158016