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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9240264_9240888_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9240264 - 9240888
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
CTCTTCCCAACA
Flanking Amino Acid:
CLAKCRTSSQSVQHENTYRD
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
74.5
0.55
0.8
69.9
29.6
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
49.4
-0
1.9
63.62
42.9

Associated Gene:

Gene:
C12orf49
Ensembl Gene ID:
ENSAPLG00000027517
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024083
9238701 - 9244414
5714