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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9241684_9242943_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9241684 - 9242943
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGCTTA
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TAAGTCTTCACA
Flanking Amino Acid:
QGKLLITDELGYICERKDLL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
67.6
40.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
60.8
0.37
2.3
64.2
47.3
Minor BPS
53
0.09
1.9
64.72
41.7

Associated Gene:

Gene:
C12orf49
Ensembl Gene ID:
ENSAPLG00000027517
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024083
9238701 - 9244414
5714