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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9244624_9246574_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9244624 - 9246574
Intron Length:
1951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTACACATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
44
-0.3
2.1
67.42
43

Associated Gene:

Gene:
RNFT2
Ensembl Gene ID:
ENSAPLG00000011870
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039574
9243953 - 9274627
30675
ENSAPLT00000019251
9244435 - 9274627
30193
ENSAPLT00000012380
9243953 - 9274463
30511