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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9247065_9249852_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9247065 - 9249852
Intron Length:
2788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATC
Flanking Amino Acid:
SSNTDNAPPERNRSQTVSSE
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.8
0.6
0.8
70.2
29.1
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
87.5
1.16
0.8
90.01
23.7

Associated Gene:

Gene:
RNFT2
Ensembl Gene ID:
ENSAPLG00000011870
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039574
9243953 - 9274627
30675
ENSAPLT00000019251
9244435 - 9274627
30193
ENSAPLT00000012380
9243953 - 9274463
30511