Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9250332_9251476_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9250332 - 9251476

Intron Length:

1145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCACT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAC

U12 Branch Point Sequence:

TGTACTCTGACA

Flanking Amino Acid:

TAKVCFQHKLGIAVCIGMAS

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

77.1

37.8

Major BPS

61.6

0.29

1.4

63.4

Major PPT

89.5

0.89

0.6

22.6

Minor 5ss

42.2

-0.9

2.9

56.1

42.2

Minor BPS

0.15

1.7

68.92

36.9

Associated Gene:

Gene:

RNFT2

Ensembl Gene ID:

ENSAPLG00000011870

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012380

9243953 - 9274463

30511

ENSAPLT00000039574

9243953 - 9274627

30675

ENSAPLT00000019251

9244435 - 9274627

30193