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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9251554_9253100_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9251554 - 9253100
Intron Length:
1547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTGAATTTACCT
Flanking Amino Acid:
STLREQVALKEKRSVLVVFW
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
81
0.7
0.9
80.5
37
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
52.5
0.16
1.8
73.34
43.6

Associated Gene:

Gene:
RNFT2
Ensembl Gene ID:
ENSAPLG00000011870
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012380
9243953 - 9274463
30511
ENSAPLT00000039574
9243953 - 9274627
30675
ENSAPLT00000019251
9244435 - 9274627
30193