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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9255859_9266874_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9255859 - 9266874
Intron Length:
11016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
PKIILAVKSKGKFYLVIEEL
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.5
0.62
1
78.4
33.3
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
RNFT2
Ensembl Gene ID:
ENSAPLG00000011870
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039574
9243953 - 9274627
30675
ENSAPLT00000019251
9244435 - 9274627
30193
ENSAPLT00000012380
9243953 - 9274463
30511