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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9267025_9271524_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9267025 - 9271524
Intron Length:
4500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATATCTAAAATT
Flanking Amino Acid:
ILIILYSLCKSFDICGRVGS
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.8
0.74
0.8
77.4
35.6
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
50.3
0.09
1.9
71.93
39.3

Associated Gene:

Gene:
RNFT2
Ensembl Gene ID:
ENSAPLG00000011870
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012380
9243953 - 9274463
30511
ENSAPLT00000039574
9243953 - 9274627
30675
ENSAPLT00000019251
9244435 - 9274627
30193