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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_92679_93161_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92679 - 93161
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
GTTTTAATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATACCCATAATC
Flanking Amino Acid:
SSTSPDFGINELVKGVDLSQ
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76
0.58
0.9
67.2
42.8
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
60.1
0.3
1.6
68.72
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018082
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021944
74477 - 95464
20988