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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9271591_9274328_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9271591 - 9274328
Intron Length:
2738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
TTTGTCTCCACA
Flanking Amino Acid:
KALKVLCTPQHVFCEECLCL
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
50.3
0
2.1
70.77
41.8

Associated Gene:

Gene:
RNFT2
Ensembl Gene ID:
ENSAPLG00000011870
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012380
9243953 - 9274463
30511