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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9295037_9297684_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9295037 - 9297684
Intron Length:
2648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGACGG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
DLLGQLIRDLNEINEVPFFD
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
50
46.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
30.1
-2.3
3.3
35.6
43.1
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
FBXW8
Ensembl Gene ID:
ENSAPLG00000012002
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045787
9294734 - 9331021
36288
ENSAPLT00000032882
9294734 - 9331021
36288
ENSAPLT00000012512
9294734 - 9330777
36044