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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9297790_9306933_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9297790 - 9306933
Intron Length:
9144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATATATTTGATT
Flanking Amino Acid:
GKAELGRCAQVSRTWKILAE
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
76
0.59
0.9
67.2
43.4
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
60.3
0.41
1.4
74.68
36

Associated Gene:

Gene:
FBXW8
Ensembl Gene ID:
ENSAPLG00000012002
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012512
9294734 - 9330777
36044
ENSAPLT00000045787
9294734 - 9331021
36288
ENSAPLT00000032882
9294734 - 9331021
36288