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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9307794_9320887_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9307794 - 9320887
Intron Length:
13094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TGTTTTTGGAAT
Flanking Amino Acid:
VHSSDGVVIAGYTSGEVRLW
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
88.5
0.87
0.7
80.6
31.4
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
52.7
0.17
1.6
73.04
37.6

Associated Gene:

Gene:
FBXW8
Ensembl Gene ID:
ENSAPLG00000012002
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032882
9294734 - 9331021
36288
ENSAPLT00000012512
9294734 - 9330777
36044
ENSAPLT00000045787
9294734 - 9331021
36288