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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9321050_9328283_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9321050 - 9328283
Intron Length:
7234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAACCACA
5'SS Class:
weak_major
3'SS Sequence:
AAGGAACTGTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
SLAVAAYEDGNVWSLMTGRE
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
65.3
40.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
48.3
-0.1
1.1
41.3
43.2
Minor 5ss
46.9
-0.3
2.6
58.9
39.7
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
FBXW8
Ensembl Gene ID:
ENSAPLG00000012002
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012512
9294734 - 9330777
36044