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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9346248_9347251_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9346248 - 9347251
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
FSIGLIMKHKRYGYNCVIYG
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
100
1.24
0.5
100
0
Major PPT
76.7
0.6
0.9
78.8
33.5
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
FBXO21
Ensembl Gene ID:
ENSAPLG00000012257
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012785
9341271 - 9361600
20330