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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9350116_9350904_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9350116 - 9350904
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACAAT
U12 Branch Point Sequence:
CTAGCCTTACAA
Flanking Amino Acid:
MVGNLLNLGKRESTDQSYQL
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.2
37.4
Major BPS
65.2
0.38
1.3
73.4
38.5
Major PPT
80.2
0.68
1
77.3
37
Minor 5ss
37
-1.5
3
50
46.3
Minor BPS
49.9
-0
1.9
61.1
44.8

Associated Gene:

Gene:
FBXO21
Ensembl Gene ID:
ENSAPLG00000012257
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012785
9341271 - 9361600
20330