About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9351082_9351843_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9351082 - 9351843
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GATGTCTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
GTTTCCTTGATG
Flanking Amino Acid:
FLLRWCQGKEGSTDIFDYTY
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
32.7
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
65.5
0.35
1
63.7
42.5
Minor 5ss
33.9
-1.8
3.3
40.8
45.4
Minor BPS
76.6
0.69
1.2
75.4
36.6

Associated Gene:

Gene:
FBXO21
Ensembl Gene ID:
ENSAPLG00000012257
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012785
9341271 - 9361600
20330