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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9351981_9352220_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9351981 - 9352220
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTTTCTTAATA
Flanking Amino Acid:
YNSLNSYIHQVLIRRTGIPI
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.2
34.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
77
0.61
1
69.1
41.7
Minor 5ss
31.9
-2.1
3.3
41.7
44.9
Minor BPS
81.3
0.98
1
82.43
32.9

Associated Gene:

Gene:
FBXO21
Ensembl Gene ID:
ENSAPLG00000012257
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012785
9341271 - 9361600
20330