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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9353335_9354546_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9353335 - 9354546
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATGT
Flanking Amino Acid:
RPTDQQSFLEGAVLIDQYCN
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
91.2
0.93
0.7
84.6
36
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
60.6
0.41
1.9
80.05
42

Associated Gene:

Gene:
FBXO21
Ensembl Gene ID:
ENSAPLG00000012257
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012785
9341271 - 9361600
20330