About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9354669_9356665_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9354669 - 9356665
Intron Length:
1997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTGTGTTTCATT
Flanking Amino Acid:
ELMCILNMEGRKGLTWKYYA
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
81.2
0.7
0.9
76.8
37
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
50.4
0.09
2.2
74.76
43.2

Associated Gene:

Gene:
FBXO21
Ensembl Gene ID:
ENSAPLG00000012257
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012785
9341271 - 9361600
20330