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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9372697_9373013_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9372697 - 9373013
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCGCT
5'SS Class:
major
3'SS Sequence:
CTCCCTCCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TTAACCTCATCT
Flanking Amino Acid:
AYSREPDKPKKYVQDVLQEQ
Intron Amino Acid Position:
1316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
65.8
40.2
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
62
0.27
1
59.6
30.2
Minor 5ss
32.1
-2
3.6
47.1
48.5
Minor BPS
57.6
0.32
1.9
78.47
43.1

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025451
9369794 - 9389420
19627
ENSAPLT00000047618
9369794 - 9386924
17131
ENSAPLT00000013311
9371593 - 9402728
31136
ENSAPLT00000046283
9369794 - 9386253
16460
ENSAPLT00000026476
9369794 - 9386300
16507