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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9373744_9374025_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9373744 - 9374025
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CTGGCTTTAACC
Flanking Amino Acid:
PEEVVPCFVRGAPSFHLPQD
Intron Amino Acid Position:
1225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
73.1
0.52
0.8
65.9
28.9
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
67.2
0.52
1.4
69.38
42.8

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046283
9369794 - 9386253
16460
ENSAPLT00000026476
9369794 - 9386300
16507
ENSAPLT00000025451
9369794 - 9389420
19627
ENSAPLT00000013311
9371593 - 9402728
31136