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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9374997_9375637_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9374997 - 9375637
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
GGGCTTGCAGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
AGGGCTTGCAGG
Flanking Amino Acid:
EKKRLQVLSKYEEWKWSKNP
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
44.3
-0.3
1.7
43.6
42.3
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
36.5
-1.2
2
34.51
40.3

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047618
9369794 - 9386924
17131
ENSAPLT00000046283
9369794 - 9386253
16460
ENSAPLT00000026476
9369794 - 9386300
16507
ENSAPLT00000025451
9369794 - 9389420
19627