About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9375844_9376337_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9375844 - 9376337
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCCAACCAG
5'SS Class:
weak_major
3'SS Sequence:
TCCTTATGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GTGTCCTTATGC
Flanking Amino Acid:
LIDRLEDAPPADPLVVLGSL
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.11
1.4
40.8
45.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
73.8
0.54
0.9
72.7
36.5
Minor 5ss
22.1
-3.2
3.7
30.6
42.7
Minor BPS
56.5
0.18
1.9
66.87
44.7

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025451
9369794 - 9389420
19627
ENSAPLT00000047618
9369794 - 9386924
17131
ENSAPLT00000046283
9369794 - 9386253
16460
ENSAPLT00000026476
9369794 - 9386300
16507