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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9376481_9376958_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9376481 - 9376958
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
TGTCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAC
U12 Branch Point Sequence:
GTCCCCAAAACA
Flanking Amino Acid:
TRQNLQSPKSSRSTIFLRLH
Intron Amino Acid Position:
1015

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65.2
40.3
Major BPS
47.8
-0.1
1
53.1
30.9
Major PPT
83.4
0.75
0.8
77.3
31.4
Minor 5ss
29.4
-2.4
3.5
41.3
45.4
Minor BPS
48.7
-0.1
2
62.7
43

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046283
9369794 - 9386253
16460
ENSAPLT00000026476
9369794 - 9386300
16507
ENSAPLT00000025451
9369794 - 9389420
19627
ENSAPLT00000013311
9371593 - 9402728
31136
ENSAPLT00000047618
9369794 - 9386924
17131