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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9377038_9377622_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9377038 - 9377622
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAGAGA
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CATCTCTTCACG
Flanking Amino Acid:
YVAEAPELTQGLYSIHKKRV
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
59.2
41.3
Major BPS
77.5
0.68
1
79.6
33
Major PPT
85.6
0.8
0.7
81.3
23.7
Minor 5ss
24.5
-2.9
3.1
31
42.6
Minor BPS
51.1
-0.1
1.9
57.35
44.2

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026476
9369794 - 9386300
16507
ENSAPLT00000025451
9369794 - 9389420
19627
ENSAPLT00000013311
9371593 - 9402728
31136
ENSAPLT00000047618
9369794 - 9386924
17131
ENSAPLT00000046283
9369794 - 9386253
16460