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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9378114_9378307_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9378114 - 9378307
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGGG
5'SS Class:
major
3'SS Sequence:
TCTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATCAC
U12 Branch Point Sequence:
GCCACATCACCT
Flanking Amino Acid:
FESTGPLANVRFSVFGLGSR
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
60.4
44.7
Major BPS
56.9
0.17
1.1
59.7
36.1
Major PPT
82.7
0.73
0.7
76.9
25
Minor 5ss
35.1
-1.7
3.4
46.8
48.5
Minor BPS
42
-0.5
2
54.87
46.3

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026476
9369794 - 9386300
16507
ENSAPLT00000025451
9369794 - 9389420
19627
ENSAPLT00000013311
9371593 - 9402728
31136
ENSAPLT00000047618
9369794 - 9386924
17131
ENSAPLT00000046283
9369794 - 9386253
16460