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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9380601_9380956_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9380601 - 9380956
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTGTTCATT
Flanking Amino Acid:
GNGDPPENGEKFGCALMEMK
Intron Amino Acid Position:
828

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
43.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
91.9
0.94
0.5
89.3
19.5
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
48.6
-0
2.4
74.52
43.3

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013311
9371593 - 9402728
31136