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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9381326_9382906_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9381326 - 9382906
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCGTGCTCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTTACCACAATT
Flanking Amino Acid:
KRAIGFKKLAKAVKFSAKLM
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
67.4
0.39
0.9
62
34.8
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
52
0.14
1.9
74.16
42.6

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013311
9371593 - 9402728
31136