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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9382993_9383986_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9382993 - 9383986
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTCT
5'SS Class:
weak_major
3'SS Sequence:
TTCTCCCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAT
U12 Branch Point Sequence:
TGCCCATCAGCT
Flanking Amino Acid:
YRLTPSFEYQPDPWNTHVWK
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
63.4
43.7
Major BPS
57.1
0.18
1.4
66.4
42.2
Major PPT
76.9
0.6
0.7
69.7
31
Minor 5ss
53.5
0.12
2.8
74.9
41
Minor BPS
45.4
-0.2
2
64.31
45.2

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047618
9369794 - 9386924
17131
ENSAPLT00000025451
9369794 - 9389420
19627
ENSAPLT00000046283
9369794 - 9386253
16460
ENSAPLT00000013311
9371593 - 9402728
31136
ENSAPLT00000026476
9369794 - 9386300
16507
ENSAPLT00000026032
9377172 - 9386924
9753