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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9384903_9385377_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9384903 - 9385377
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCCG
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTGTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
AAATCTTCACCT
Flanking Amino Acid:
CDNSRYNILEQVAKKMNLDM
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
68.7
42.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.2
0.61
0.9
71.5
38.3
Minor 5ss
33.9
-1.8
2.9
42.1
44.5
Minor BPS
51.1
0.11
1.8
68.86
41.8

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026032
9377172 - 9386924
9753
ENSAPLT00000025451
9369794 - 9389420
19627
ENSAPLT00000013311
9371593 - 9402728
31136
ENSAPLT00000047618
9369794 - 9386924
17131
ENSAPLT00000046283
9369794 - 9386253
16460