Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9385553_9385913_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9385553 - 9385913

Intron Length:

361

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

TATATCCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTATAT

U12 Branch Point Sequence:

ATTGCCTGACCC

Flanking Amino Acid:

LVLEVPIRHPKFEWFKELGL

Intron Amino Acid Position:

558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

71.6

40.1

Major BPS

61.5

0.29

1.3

45.5

Major PPT

70.9

0.47

66.4

40.2

Minor 5ss

35.3

-1.7

2.9

41.6

Minor BPS

55.2

0.14

1.9

69.62

41.7

Associated Gene:

Gene:

NOS1

Ensembl Gene ID:

ENSAPLG00000012700

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026032

9377172 - 9386924

9753

ENSAPLT00000025451

9369794 - 9389420

19627

ENSAPLT00000013311

9371593 - 9402728

31136

ENSAPLT00000047618

9369794 - 9386924

17131