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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9386054_9386165_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9386054 - 9386165
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGCC
5'SS Class:
major
3'SS Sequence:
GTTTTGGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GGACCTCTAACC
Flanking Amino Acid:
GDPANVELTEICIQQGWKAP
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
58.3
42
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
72.2
0.5
1
66.2
40.8
Minor 5ss
36.2
-1.6
3.5
51.7
45
Minor BPS
50.7
0
1.7
59.59
38.5

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026032
9377172 - 9386924
9753
ENSAPLT00000025451
9369794 - 9389420
19627
ENSAPLT00000013311
9371593 - 9402728
31136
ENSAPLT00000047618
9369794 - 9386924
17131