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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9386308_9386868_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9386308 - 9386868
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
CCCGTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GGGTGCTCACGG
Flanking Amino Acid:
IKYATNKGNLRSAITIFPQR
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
68.4
38.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
75.4
0.57
0.8
68.4
31.9
Minor 5ss
32.7
-2
3
41
45.6
Minor BPS
36.4
-1.1
2.2
36.67
45

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013311
9371593 - 9402728
31136
ENSAPLT00000047618
9369794 - 9386924
17131
ENSAPLT00000026032
9377172 - 9386924
9753