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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9386342_9389398_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9386342 - 9389398
Intron Length:
3057

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCTCGGAGC
5'SS Class:
major
3'SS Sequence:
CATGCTGTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCCCTCTGAAGA
Flanking Amino Acid:
RILGWAGAWVLTVLPRP
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
67.2
40.9
Major BPS
69.8
0.49
1
61
37.5
Major PPT
67.7
0.4
1
60.2
40.1
Minor 5ss
17.6
-3.7
3.6
26.2
36.3
Minor BPS
48.2
-0.1
1.8
56.77
42.7

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025451
9369794 - 9389420
19627