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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9388125_9388231_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9388125 - 9388231
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
CCCACCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAA
U12 Branch Point Sequence:
GGTTGGTGAATG
Flanking Amino Acid:
FIDQYYSSIKRSGSKAHMER
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.1
36.3
Major BPS
56.9
0.17
1.3
49.1
46.3
Major PPT
72.3
0.5
0.8
64.7
30.6
Minor 5ss
33.8
-1.8
2.9
41.1
44.9
Minor BPS
41.9
-0.7
2.4
49.64
44.3

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013311
9371593 - 9402728
31136