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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9393333_9402003_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9393333 - 9402003
Intron Length:
8671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTCCC
5'SS Class:
major
3'SS Sequence:
CTTAACCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGCTTCTTAACC
Flanking Amino Acid:
ETRDIEVQVDCFREGENKLQ
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
62.9
39.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.2
0.57
0.9
70.5
35.8
Minor 5ss
34.2
-1.8
3.1
42
38.9
Minor BPS
78.3
0.87
1.1
78.59
37

Associated Gene:

Gene:
NOS1
Ensembl Gene ID:
ENSAPLG00000012700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013311
9371593 - 9402728
31136