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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9434222_9434523_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9434222 - 9434523
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
CGTGTGGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GGGTGCTCACGC
Flanking Amino Acid:
SQIGMGKEISDILLFCWAYE
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
70.3
40.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
66
0.36
1
57.6
43.2
Minor 5ss
34.7
-1.7
3.5
50.7
45.7
Minor BPS
38
-0.9
2.2
43.7
43.8

Associated Gene:

Gene:
KSR2
Ensembl Gene ID:
ENSAPLG00000004721
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004858
9434084 - 9461790
27707