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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9434654_9435834_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9434654 - 9435834
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TGTCTCCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGCTCCTGATCC
Flanking Amino Acid:
FSKHSDVFALGTIWYELHAR
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
71.5
0.48
0.9
63.8
38
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
57.9
0.23
1.8
68.17
43

Associated Gene:

Gene:
KSR2
Ensembl Gene ID:
ENSAPLG00000004721
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004858
9434084 - 9461790
27707