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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9441560_9450500_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9441560 - 9450500
Intron Length:
8941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCC
5'SS Class:
major
3'SS Sequence:
CCTGTCCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTGTTGTTATCT
Flanking Amino Acid:
MSPPHLAIITSLCKGRTLYS
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
64.9
37.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.7
0.65
0.8
69.1
37
Minor 5ss
30.6
-2.2
3.5
42.1
44.9
Minor BPS
49.1
0.02
2.3
71.83
45.2

Associated Gene:

Gene:
KSR2
Ensembl Gene ID:
ENSAPLG00000004721
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004858
9434084 - 9461790
27707