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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_9456502_9457589_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9456502 - 9457589
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCCTTTCTT
5'SS Class:
weak_major
3'SS Sequence:
CCTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAC
U12 Branch Point Sequence:
CCCCCTCCACCC
Flanking Amino Acid:
HLLIIHRGGKARLVRTESVP
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.4
58.4
45.8
Major BPS
47
-0.1
1.3
55.7
39.5
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
31
-2.2
3.9
42
44.5
Minor BPS
37.6
-0.9
1.9
39.96
39.8

Associated Gene:

Gene:
KSR2
Ensembl Gene ID:
ENSAPLG00000004721
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004858
9434084 - 9461790
27707